CLEANUP - changes to folder structure

This commit is contained in:
Silas Oettinghaus
2026-03-25 10:57:48 +01:00
parent 0c5ad28f0a
commit 0ae846d3c3
351 changed files with 405 additions and 1294 deletions

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basePath = 'C:\Users\sioe\Documents\MATLAB\imdd_simulation\projects\ECOC_2025\';
database_name = 'ecoc2025.db';
database = DBHandler("pathToDB", [basePath, database_name],"type",'mysql');
filterParams = database.tables;
filterParams.Configurations = struct( ...
'symbolrate', 112e9, ... %[224,336,360,390,420,448]
'fiber_length', 0, ...
'db_mode', '"no_db"', ...
'interference_attenuation', [], ...
'interference_path_length', [], ...
'is_mpi', 1, ...
'pam_level', 4, ...
'wavelength', 1310, ...
'precomp_amp', -64, ...
'signal_attenuation', '0', ...
'v_awg', [], ...
'v_bias', [] ...
);
% filterParams.EqualizerParameters.diff_precode = int32(db_mode.db_encoded);
% filterParams.EqualizerParameters.equalizer_structure = int32(equalizer_structure.vnle);
selectedFields = {'Configurations.run_id' 'Runs.date_of_run' 'Runs.rx_raw_path' 'Configurations.bitrate' 'Configurations.v_bias' 'Configurations.v_awg' 'Configurations.precomp_amp' 'Configurations.symbolrate' 'Configurations.pam_level'...
'Configurations.db_mode' 'Configurations.rop_attenuation' 'Configurations.is_mpi' 'Configurations.interference_attenuation' 'Configurations.signal_attenuation' ...
'EqualizerParameters.equalizer_structure' 'EqualizerParameters.diff_precode' 'EqualizerParameters.eq_id' 'Measurements.power_pd_in' ...
'Measurements.power_mpi_interference' 'Measurements.power_mpi_signal' 'Results.BER' 'Results.BER_precoded' 'Results.SNR' 'Results.GMI' 'Results.Alpha' 'Results.date_of_processing'};
[dataTable,sql_query] = database.queryDB(filterParams, selectedFields);
dataTable = cleanUpTable(dataTable);
% Filter by time
startTime = datetime('2025-04-11 13:00:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
stopTime = datetime('2025-04-11 14:00:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
dataTable.date_of_run = datetime(dataTable.date_of_run, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable.date_of_processing = datetime(dataTable.date_of_processing, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable = dataTable(dataTable.date_of_processing > startTime, :);
dataTable = dataTable(dataTable.date_of_processing < stopTime, :);
% Group by smth
y_var = 'SNR';
x_var = 'v_bias';
loop_var = 'v_awg';
fixedVars = {'eq_id',loop_var};
dataTableGrpd = groupIt(fixedVars,dataTable);
plotRealizations = 1;
% Create a new figure
mkr = 'x';
figure(10);
hold on
unique_loop_var = unique(dataTable.(loop_var));
cols = linspecer(8);
for i = 1:numel(unique_loop_var)
idx = find(dataTable.(loop_var)== unique_loop_var(i), 1, 'first');
% dispname = equalizer_structure(dataTable.equalizer_structure(idx));
dispname = num2str(unique_loop_var(i));
% Plot SCATTERS: timestamp vs. interference_attenuation
loop_filt_2 = dataTable.(loop_var)==unique_loop_var(i);
if plotRealizations
y_values = dataTable.(y_var)(loop_filt_2,:);
x_values = dataTable.(x_var)(loop_filt_2,:);
y_values = double(y_values);
x_values = double(x_values);
sc = scatter(x_values, y_values, 'LineWidth', 0.5,'Marker',mkr,'MarkerEdgeColor',cols(i,:),'HandleVisibility','on','DisplayName',string(dispname));
pair_one = {'Run ID', dataTable.run_id(loop_filt_2,:)};
pair_two = {'Rate', dataTable.bitrate(loop_filt_2,:).*1e-9};
pair_three = {'PD in', round(dataTable.power_pd_in(loop_filt_2,:),2)};
addDatatips(sc, pair_one, pair_two,pair_three);
xticks(unique(x_values));
end
end
% Label the axes and add a title
legend('Interpreter','latex');
xlabel(x_var);
ylabel(y_var);
title([x_var,' vs. ',y_var]);
if y_var == 'BER'
yline(3.8e-3,'LineWidth',1,'LineStyle','--','HandleVisibility','off');
ylim([1e-4 0.5]);
end
% Enable grid for better readability
grid on;
beautifyBERplot;
function resultTable = groupIt(fixedVars,dataTable)
% Group by run_id and eq_id (adjust grouping keys as needed)
[G, groupKeys] = findgroups(dataTable(:, fixedVars));
% Preallocate a cell array for aggregated data.
varNames = dataTable.Properties.VariableNames;
nVars = numel(varNames);
aggData = cell(height(groupKeys), nVars);
groupCount = zeros(height(groupKeys), 1); % To store the size of each group
% Loop over each group.
for i = 1:height(groupKeys)
idx = (G == i); % Logical index for group i
groupCount(i) = sum(idx); % Count number of rows in this group
% For each variable in the table:
for j = 1:nVars
colData = dataTable.(varNames{j});
if isnumeric(colData)
% For numeric data, compute the mean.
aggData{i, j} = min(colData(idx));
else
% For non-numeric data, take the first entry.
if iscell(colData)
aggData{i, j} = colData{find(idx, 1)};
else
aggData{i, j} = colData(find(idx, 1));
end
end
end
end
% Convert the aggregated cell array into a table.
resultTable = cell2table(aggData, 'VariableNames', varNames);
% Append the group count as a new column.
resultTable.nRows = groupCount;
end
function addDatatips(sc, varargin)
% addDatatips Adds custom data tip rows to a scatter plot.
%
% addDatatips(sc, pair1, pair2, ...) adds one or more custom rows to the
% data tip display of the scatter plot identified by sc.
%
% Each pair should be provided as a 1x2 cell array: {label, value}.
% The value can be a scalar or a vector. If a vector is provided, its length
% must match the number of scatter plot points.
%
% Example:
% sc = scatter(x, y, 'LineWidth', 1.5, 'Marker', 'o');
% pair_one = {'Attenuation', attenuationVector};
% addDatatips(sc, pair_one);
numPoints = numel(sc.XData);
for k = 1:length(varargin)
pair = varargin{k};
if ~iscell(pair) || numel(pair) ~= 2
error('Each pair must be a 1x2 cell array: {label, value}.');
end
label = pair{1};
value = pair{2};
% If value is a vector, ensure its length is either 1 or equal to the number of scatter points.
if isvector(value) && numel(value) ~= 1 && numel(value) ~= numPoints
error('The vector for "%s" must be a scalar or have %d elements matching the scatter data points.', label, numPoints);
end
% Create a new data tip row using the provided label and vector.
newRow = dataTipTextRow(label, value);
sc.DataTipTemplate.DataTipRows(end+1) = newRow;
end
end
function cleanedTable = cleanUpTable(inputTable)
% cleanUpTable Cleans a MATLAB table where numbers and NaNs are stored as strings or structs.
%
% cleanedTable = cleanUpTable(inputTable)
%
% This function goes through all columns of the input table:
% - Converts strings of numbers to numeric values
% - Converts string 'NaN' and struct NaNs to real NaN
% - Converts date strings to datetime (if possible)
%
% Input:
% inputTable - MATLAB table with mixed types
%
% Output:
% cleanedTable - Cleaned MATLAB table with proper numeric types
cleanedTable = inputTable;
varNames = cleanedTable.Properties.VariableNames;
for i = 1:numel(varNames)
col = cleanedTable.(varNames{i});
% Case 1: If it's a cell array (likely mixed strings/struct)
if iscell(col)
% Convert struct 'NaN' entries to string 'NaN'
col = cellfun(@(x) convertStructToString(x), col, 'UniformOutput', false);
% Try to convert string numbers to actual numbers
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, 'NaN') | cellfun(@isempty, col))
% If conversion is successful (NaNs correspond to 'NaN' strings), use it
cleanedTable.(varNames{i}) = numericCol;
else
% Else, try to convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
catch
% If it fails, leave as cell array of strings
cleanedTable.(varNames{i}) = string(col);
end
end
% Case 2: If it's already a string array
elseif isstring(col)
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, "NaN"))
cleanedTable.(varNames{i}) = numericCol;
else
% Try convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
catch
% Leave as string
end
end
% Case 3: If it's already numeric, keep as is
elseif isnumeric(col)
continue;
% Case 4: If it's datetime, keep as is
elseif isdatetime(col)
continue;
else
% Catch-all for unexpected types, convert to string
cleanedTable.(varNames{i}) = string(col);
end
end
end
function out = convertStructToString(x)
% Helper function to convert struct NaN to string 'NaN'
if isstruct(x)
out = "NaN";
elseif isstring(x) || ischar(x)
out = string(x);
else
out = x;
end
end

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basePath = 'C:\Users\sioe\Documents\MATLAB\imdd_simulation\projects\ECOC_2025\';
database_name = 'ecoc2025.db';
database = DBHandler("pathToDB", [basePath, database_name]);
filterParams = database.tables;
filterParams.Configurations = struct( ...
'symbolrate', 112e9, ... %[224,336,360,390,420,448]
'fiber_length', 0, ...
'db_mode', '"no_db"', ...
'interference_attenuation', [], ...
'interference_path_length', [], ...
'is_mpi', 0, ...
'pam_level', 4, ...
'wavelength', 1310, ...
'precomp_amp', [], ...
'signal_attenuation', [], ...
'v_awg', 0.8, ...
'v_bias', 2.8 ...
);
% filterParams.EqualizerParameters.diff_precode = int32(db_mode.db_encoded);
% filterParams.EqualizerParameters.equalizer_structure = int32(equalizer_structure.vnle);
selectedFields = {'Configurations.run_id' 'Runs.date_of_run' 'Runs.rx_raw_path' 'Configurations.bitrate' 'Configurations.v_bias' 'Configurations.v_awg' 'Configurations.precomp_amp' 'Configurations.symbolrate' 'Configurations.pam_level'...
'Configurations.db_mode' 'Configurations.rop_attenuation' 'Configurations.is_mpi' 'Configurations.interference_attenuation' 'Configurations.signal_attenuation' ...
'EqualizerParameters.equalizer_structure' 'EqualizerParameters.diff_precode' 'EqualizerParameters.eq_id' 'Measurements.power_pd_in' ...
'Measurements.power_mpi_interference' 'Measurements.power_mpi_signal' 'Results.BER' 'Results.BER_precoded' 'Results.SNR' 'Results.GMI' 'Results.Alpha' 'Results.date_of_processing'};
[dataTable,sql_query] = database.queryDB(filterParams, selectedFields);
dataTable = cleanUpTable(dataTable);
% Filter by time
startTime = datetime('2025-04-11 13:00:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
stopTime = datetime('2025-04-11 14:00:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
dataTable.date_of_run = datetime(dataTable.date_of_run, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable.date_of_processing = datetime(dataTable.date_of_processing, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable = dataTable(dataTable.date_of_processing > startTime, :);
dataTable = dataTable(dataTable.date_of_processing < stopTime, :);
% Group by smth
y_var = 'BER';
x_var = 'interference_attenuation';
loop_var = 'eq_id';
fixedVars = {'eq_id',loop_var};
dataTableGrpd = groupIt(fixedVars,dataTable);
plotRealizations = 1;
% Create a new figure
mkr = '*';
figure(10);
hold on
unique_loop_var = unique(dataTable.(loop_var));
cols = linspecer(8);
for i = 1:numel(unique_loop_var)
idx = find(dataTable.(loop_var)== unique_loop_var(i), 1, 'first');
dispname = equalizer_structure(dataTable.equalizer_structure(idx));
% dispname = num2str(unique_loop_var(i));
% Plot SCATTERS: timestamp vs. interference_attenuation
loop_filt_2 = dataTable.(loop_var)==unique_loop_var(i);
if plotRealizations
y_values = dataTable.(y_var)(loop_filt_2,:);
x_values = dataTable.(x_var)(loop_filt_2,:);
y_values = double(y_values);
x_values = double(x_values);
sc = scatter(x_values, y_values, 'LineWidth', 0.5,'Marker',mkr,'MarkerEdgeColor',cols(i,:),'HandleVisibility','on','DisplayName',string(dispname));
pair_one = {'Run ID', dataTable.run_id(loop_filt_2,:)};
pair_two = {'Rate', dataTable.bitrate(loop_filt_2,:).*1e-9};
pair_three = {'PD in', round(dataTable.power_pd_in(loop_filt_2,:),2)};
addDatatips(sc, pair_one, pair_two,pair_three);
xticks(unique(x_values));
end
end
% Label the axes and add a title
legend('Interpreter','latex');
xlabel(x_var);
ylabel(y_var);
title([x_var,' vs. ',y_var]);
if y_var == 'BER'
yline(3.8e-3,'LineWidth',1,'LineStyle','--','HandleVisibility','off');
ylim([1e-5 0.1]);
end
% Enable grid for better readability
grid on;
beautifyBERplot;
function resultTable = groupIt(fixedVars,dataTable)
% Group by run_id and eq_id (adjust grouping keys as needed)
[G, groupKeys] = findgroups(dataTable(:, fixedVars));
% Preallocate a cell array for aggregated data.
varNames = dataTable.Properties.VariableNames;
nVars = numel(varNames);
aggData = cell(height(groupKeys), nVars);
groupCount = zeros(height(groupKeys), 1); % To store the size of each group
% Loop over each group.
for i = 1:height(groupKeys)
idx = (G == i); % Logical index for group i
groupCount(i) = sum(idx); % Count number of rows in this group
% For each variable in the table:
for j = 1:nVars
colData = dataTable.(varNames{j});
if isnumeric(colData)
% For numeric data, compute the mean.
aggData{i, j} = min(colData(idx));
else
% For non-numeric data, take the first entry.
if iscell(colData)
aggData{i, j} = colData{find(idx, 1)};
else
aggData{i, j} = colData(find(idx, 1));
end
end
end
end
% Convert the aggregated cell array into a table.
resultTable = cell2table(aggData, 'VariableNames', varNames);
% Append the group count as a new column.
resultTable.nRows = groupCount;
end
function addDatatips(sc, varargin)
% addDatatips Adds custom data tip rows to a scatter plot.
%
% addDatatips(sc, pair1, pair2, ...) adds one or more custom rows to the
% data tip display of the scatter plot identified by sc.
%
% Each pair should be provided as a 1x2 cell array: {label, value}.
% The value can be a scalar or a vector. If a vector is provided, its length
% must match the number of scatter plot points.
%
% Example:
% sc = scatter(x, y, 'LineWidth', 1.5, 'Marker', 'o');
% pair_one = {'Attenuation', attenuationVector};
% addDatatips(sc, pair_one);
numPoints = numel(sc.XData);
for k = 1:length(varargin)
pair = varargin{k};
if ~iscell(pair) || numel(pair) ~= 2
error('Each pair must be a 1x2 cell array: {label, value}.');
end
label = pair{1};
value = pair{2};
% If value is a vector, ensure its length is either 1 or equal to the number of scatter points.
if isvector(value) && numel(value) ~= 1 && numel(value) ~= numPoints
error('The vector for "%s" must be a scalar or have %d elements matching the scatter data points.', label, numPoints);
end
% Create a new data tip row using the provided label and vector.
newRow = dataTipTextRow(label, value);
sc.DataTipTemplate.DataTipRows(end+1) = newRow;
end
end
function cleanedTable = cleanUpTable(inputTable)
% cleanUpTable Cleans a MATLAB table where numbers and NaNs are stored as strings or structs.
%
% cleanedTable = cleanUpTable(inputTable)
%
% This function goes through all columns of the input table:
% - Converts strings of numbers to numeric values
% - Converts string 'NaN' and struct NaNs to real NaN
% - Converts date strings to datetime (if possible)
%
% Input:
% inputTable - MATLAB table with mixed types
%
% Output:
% cleanedTable - Cleaned MATLAB table with proper numeric types
cleanedTable = inputTable;
varNames = cleanedTable.Properties.VariableNames;
for i = 1:numel(varNames)
col = cleanedTable.(varNames{i});
% Case 1: If it's a cell array (likely mixed strings/struct)
if iscell(col)
% Convert struct 'NaN' entries to string 'NaN'
col = cellfun(@(x) convertStructToString(x), col, 'UniformOutput', false);
% Try to convert string numbers to actual numbers
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, 'NaN') | cellfun(@isempty, col))
% If conversion is successful (NaNs correspond to 'NaN' strings), use it
cleanedTable.(varNames{i}) = numericCol;
else
% Else, try to convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
catch
% If it fails, leave as cell array of strings
cleanedTable.(varNames{i}) = string(col);
end
end
% Case 2: If it's already a string array
elseif isstring(col)
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, "NaN"))
cleanedTable.(varNames{i}) = numericCol;
else
% Try convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
catch
% Leave as string
end
end
% Case 3: If it's already numeric, keep as is
elseif isnumeric(col)
continue;
% Case 4: If it's datetime, keep as is
elseif isdatetime(col)
continue;
else
% Catch-all for unexpected types, convert to string
cleanedTable.(varNames{i}) = string(col);
end
end
end
function out = convertStructToString(x)
% Helper function to convert struct NaN to string 'NaN'
if isstruct(x)
out = "NaN";
elseif isstring(x) || ischar(x)
out = string(x);
else
out = x;
end
end

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% dsp_options.database_type = 'mysql';
% dsp_options.dataBase = 'labor';
% dsp_options.storage_path = 'Z:\2025\ECOC Silas\ecoc_2025\';
% database = DBHandler("dataBase", [dsp_options.dataBase], "type", dsp_options.database_type);
% filterParams = database.tables;
% filterParams.Runs.loop_id = 209;
% % filterParams.Configurations = struct( ...
% % 'symbolrate', 112e9, ... %[224,336,360,390,420,448]
% % 'fiber_length', 0, ...
% % 'db_mode', '"no_db"', ...
% % 'interference_attenuation', [], ...
% % 'interference_path_length', 1000, ...
% % 'is_mpi', 1, ...
% % 'pam_level', 4, ...
% % 'wavelength', 1310, ...
% % 'precomp_amp', [], ...
% % 'signal_attenuation', [], ...
% % 'v_awg', [], ...
% % 'v_bias', [] ...
% % );
%
% % if 1
% % % filterParams.EqualizerParameters.dc_buffer_len = 1;
% % filterParams.EqualizerParameters.ffe_buffer_len = 1;
% % filterParams.EqualizerParameters.smoothing_buffer_len = 4096;
% % filterParams.EqualizerParameters.smoothing_buffer_update = 224;
% % filterParams.EqualizerParameters.DCmu = 0;
% % end
% a = database.getTableFieldNames('Runs');
% b = database.getTableFieldNames('Results');
% c = database.getTableFieldNames('EqualizerParameters');
% d = [a;b;c];
%
% [dataTable,~] = database.queryDB(filterParams, d);
%
% selectedFields = {'Configurations.run_id' 'Runs.loop_id' 'Runs.date_of_run' 'Runs.rx_raw_path' 'Runs.bitrate' 'Runs.v_bias' 'Runs.v_awg' 'Runs.precomp_amp' 'Runs.symbolrate' 'Runs.pam_level'...
% 'Runs.db_mode' 'Runs.rop_attenuation' 'Runs.is_mpi' 'Runs.interference_attenuation' 'Runs.interference_path_length' 'Runs.signal_attenuation' ...
% 'EqualizerParameters.equalizer_structure' 'EqualizerParameters.diff_precode' 'EqualizerParameters.eq_id' 'EqualizerParameters.dc_buffer_len' 'EqualizerParameters.ffe_buffer_len' 'EqualizerParameters.smoothing_buffer_len' 'EqualizerParameters.smoothing_buffer_update' 'EqualizerParameters.DCmu' 'Measurements.power_pd_in' ...
% 'Measurements.power_mpi_interference' 'Measurements.power_mpi_signal' 'Results.BER' 'Results.BER_precoded' 'Results.EVM' 'Results.SNR' 'Results.GMI' 'Results.Alpha' 'Results.date_of_processing'};
db = DBHandler("type","mysql","dataBase",'labor');
fp = QueryFilter();
% fp.where('mpi_superview', 'loop_id','EQUALS', 209);
fp.where('mpi_superview', 'symbolrate','EQUALS', 112e9);
fp.where('mpi_superview', 'pam_level','EQUALS', 4);
fn = [db.getTableFieldNames('mpi_superview')];
[dataTable,sql_query] = db.queryDB(fp,fn);
%%
dataTable_clean = dataTable;
dataTable_clean.SIR = -7 - round(dataTable_clean.power_mpi_interference);
dataTable_clean.NGMI = dataTable_clean.GMI ./ log2(dataTable_clean.pam_level);
dataTable_clean = cleanUpTable(dataTable_clean);
dataTable_clean(dataTable_clean.BER>0.2,:) = [];
%%
cols = linspecer(8); % Ensure color count matches
figure()
tiledlayout(1, 4, 'TileSpacing', 'compact', 'Padding', 'compact');
y_here = 0;
figcnt = 0;
for int_len = [0,50,300,1000]
figcnt = figcnt+1;
% figure(int_len+1);
nexttile;
hold on
mode = 4;
for mode = [1,2]
hold on;
dataTable = dataTable_clean;
plotBoundaries = 1;
plotRealizations = 1;
cols = linspecer(8); % Ensure color count matches
if mode == 1
% No compensation method
dataTable = dataTable(dataTable.dc_buffer_len == 1, :);
dataTable = dataTable(dataTable.ffe_buffer_len == 1, :);
dataTable = dataTable(dataTable.smoothing_buffer_len == 0, :);
dataTable = dataTable(dataTable.smoothing_buffer_update == 0, :);
dataTable = dataTable(dataTable.DCmu == 0, :);
cols = cols(1:1+1,:);
method = 'ffe only';
% slow DC smoothing
elseif mode == 2
dataTable = dataTable(dataTable.dc_buffer_len == 1, :);
dataTable = dataTable(dataTable.ffe_buffer_len == 1, :);
dataTable = dataTable(dataTable.smoothing_buffer_len == 4096, :);
dataTable = dataTable(dataTable.smoothing_buffer_update == 224, :);
dataTable = dataTable(dataTable.DCmu == 0, :);
cols = cols(4:4+1,:);
method = 'dc smoothing';
% slow DC tracking
elseif mode == 3
dataTable = dataTable(dataTable.dc_buffer_len == 224, :);
dataTable = dataTable(dataTable.ffe_buffer_len == 1, :);
dataTable = dataTable(dataTable.smoothing_buffer_len == 0, :);
dataTable = dataTable(dataTable.smoothing_buffer_update == 0, :);
dataTable = dataTable(dataTable.DCmu == 0.005, :);
cols = cols(3:3+1,:);
method = 'parallelized dc tracking';
elseif mode == 4
% ideal DC tracking
dataTable = dataTable(dataTable.dc_buffer_len == 1, :);
dataTable = dataTable(dataTable.ffe_buffer_len == 1, :);
dataTable = dataTable(dataTable.smoothing_buffer_len == 0, :);
dataTable = dataTable(dataTable.smoothing_buffer_update == 0, :);
dataTable = dataTable(dataTable.DCmu == 0.005, :);
cols = cols(2:2+1,:);
method = 'ideal dc tracking';
end
% dataTable(dataTable.eq_id==0,:) = [];
dataTable(dataTable.equalizer_structure~=1,:) = [];
% Modify values in 'interference_path_length' where the condition is met
dataTable.interference_path_length(dataTable.interference_path_length < 101 & dataTable.interference_path_length > 1) = 50;
dataTable.interference_path_length(dataTable.interference_path_length == 1) = 0;
dataTable = dataTable(dataTable.interference_path_length == int_len, :);
dataTable(dataTable.run_id == 3866, :) = [];
dataTable(dataTable.run_id == 3865, :) = [];
dataTable(dataTable.run_id == 3796, :) = [];
dataTable(dataTable.run_id == 3797, :) = [];
dataTable(dataTable.run_id == 3798, :) = [];
dataTable(dataTable.run_id == 4002, :) = [];
dataTable(dataTable.run_id == 4200, :) = [];
dataTable(dataTable.run_id == 4199, :) = [];
% 0
% 1
% 10
% 15
% 20
% 50
% 100
% 300
% 1000
% dataTable(dataTable.interference_path_length ~= 50, :) = [];
% dataTable = dataTable(dataTable.interference_path_length < 51, :);
% dataTable(dataTable.loop_id<200,:) = [];
% Filter by time
filter_by_time = 0;
if filter_by_time
startTime = datetime('2025-04-20 18:00:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
stopTime = datetime('2025-04-30 19:30:00', 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
dataTable.date_of_run = datetime(dataTable.date_of_run, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable.date_of_processing = datetime(dataTable.date_of_processing, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
dataTable = dataTable(dataTable.date_of_processing > startTime, :);
dataTable = dataTable(dataTable.date_of_processing < stopTime, :);
end
% Group by smth
y_var = 'BER';
x_var = 'SIR';
loop_var = 'interference_path_length';
fixedVars = {'equalizer_structure','interference_path_length',x_var};
[dataTable, outliersTable] = removeGroupOutliers(dataTable, fixedVars, y_var);
dataTableGrpd_mean = groupIt(fixedVars, dataTable, @mean);
dataTableGrpd_min = groupIt(fixedVars, dataTable, @min);
dataTableGrpd_max = groupIt(fixedVars, dataTable, @max);
% dataTableGrpd_mean(dataTableGrpd_mean.nRows<50,:) = [];
% dataTableGrpd_min(dataTableGrpd_min.nRows<50,:) = [];
% dataTableGrpd_max(dataTableGrpd_max.nRows<50,:) = [];
% Create a new figure
hold on
unique_loop_var = unique(dataTable.(loop_var));
for i = 1:numel(unique_loop_var)
% Prepare filtered data for this loop variable
loopValue = unique_loop_var(i);
loopFiltGrpd = dataTableGrpd_mean.(loop_var) == loopValue;
if ~any(loopFiltGrpd)
continue; % Skip if no data for this loop var
end
% Extract values
x_values = dataTableGrpd_mean.(x_var)(loopFiltGrpd, :);
y_mean = dataTableGrpd_mean.(y_var)(loopFiltGrpd, :);
y_min = dataTableGrpd_min.(y_var)(loopFiltGrpd, :);
y_max = dataTableGrpd_max.(y_var)(loopFiltGrpd, :);
% Compute bounds: distance from mean
y_lower = y_mean - y_min;
y_upper = y_max - y_mean;
y_bounds = [y_lower, y_upper];
% Display name (optional)
try
idx = find(dataTable.(loop_var) == loopValue, 1, 'first');
% dispname = char(equalizer_structure(dataTable.equalizer_structure(idx)));
dispname = [method];
dispname = [dispname, '/ ',num2str(unique_loop_var(i)) ,' m'];
% dispname = [dispname,'; ',num2str(unique(dataTable.interference_path_length)),' m'];
% dispname = [dispname, '/ PAM ', num2str(filterParams.Configurations.pam_level)];
% dispname = [dispname, '/ ', num2str(filterParams.Configurations.symbolrate.*1e-9),' GBd'];
end
if plotBoundaries
% Plot bounded line
[hl, hp] = boundedline(x_values, y_mean, y_bounds, ...
'alpha', 'transparency', 0.1, ...
'cmap', cols(i,:), ...
'nan', 'fill', ...
'orientation', 'vert');
% % Style the main line: thinnest, dotted, no marker
set(hl, 'LineWidth', 0.5, 'LineStyle', ':', 'Marker', 'none', ...
'Color', cols(i,:), 'DisplayName', string(dispname));
plt = errorbar(x_values,y_mean,y_lower,y_upper,'LineWidth', 0.9, 'LineStyle', 'none', 'Marker', 'none','Color', cols(i,:), 'DisplayName', string(dispname),'HandleVisibility','off');
% Hide patch (shaded area) from legend
set(hp, 'HandleVisibility', 'off','LineStyle',':','LineWidth',0.5,'Marker','none');
% Fit a 4th-order polynomial to log10(BER)
p = polyfit(x_values, log10(y_mean), 3); % 4 is fitting order, adjust as needed
% Evaluate the fitted polynomial
x_fit = linspace(min(x_values), max(x_values), 300); % Fine points
y_fit_log = polyval(p, x_fit); % Still in log10 domain
y_fit = 10.^y_fit_log; % Back to BER domain
plot(x_fit,y_fit,'LineWidth', 1, 'LineStyle', '-', 'Marker', 'none', ...
'Color', cols(i,:), 'DisplayName', string(dispname),'HandleVisibility','off');
% % Add invisible scatter for DataTips
% plt = scatter(x_values, y_mean, ...
% 'Marker', 'o', 'MarkerEdgeColor', 'none', 'MarkerFaceColor', 'none', ...
% 'HandleVisibility', 'off', 'PickableParts', 'all');
else
plt= plot(x_values,y_mean,'LineWidth', 1, 'LineStyle', '-', 'Marker', 'none', ...
'Color', cols(i,:), 'DisplayName', string(dispname));
% plt= errorbar(x_values,y_mean,y_lower,y_upper,'LineWidth', 1, 'LineStyle', '-', 'Marker', 'none','Color', cols(i,:), 'DisplayName', string(dispname));
end
% Add data tips to the invisible scatter
pair_one = {'Run ID', dataTableGrpd_mean.run_id(loopFiltGrpd, :)};
pair_two = {'Rate', dataTableGrpd_mean.bitrate(loopFiltGrpd, :) * 1e-9};
pair_three = {'PD in', round(dataTableGrpd_mean.power_pd_in(loopFiltGrpd, :), 2)};
addDatatips(plt, pair_one, pair_two, pair_three);
% Optionally: outline bounds for better visibility (optional)
% hnew = outlinebounds(hl, hp);
% Tick marks (x-axis)
% Optional: scatter realizations
if plotRealizations
loopFiltSingle = dataTable.(loop_var) == loopValue;
x_single = double(dataTable.(x_var)(loopFiltSingle, :));
y_single = double(dataTable.(y_var)(loopFiltSingle, :));
mkr = '.';
sc = scatter(x_single+(mode*0.1)-0.2, y_single,15, 'Marker', mkr, 'MarkerEdgeColor', cols(i, :), ...
'LineWidth', 0.5, 'HandleVisibility', 'off', 'DisplayName', string(dispname));
pair_one = {'Run ID', dataTable.run_id(loopFiltSingle, :)};
pair_two = {'Baud', dataTable.symbolrate(loopFiltSingle, :) * 1e-9};
pair_three = {'PD in', round(dataTable.power_pd_in(loopFiltSingle, :), 2)};
pair_four = {'#bits', round(dataTable.numBits(loopFiltSingle, :), 2)};
addDatatips(sc, pair_one, pair_two, pair_three,pair_four);
end
end
% Label axes and title
legend('Interpreter', 'latex');
xlabel(x_var);
if ~y_here
ylabel(y_var);
yticklabels = [];
y_here = 1;
end
if int_len ~= 0
set(gca, 'YTick', []);
end
% title([x_var, ' vs. ', y_var]);
if string(y_var) == "BER"
yline(2.2e-4, 'LineWidth', 1, 'LineStyle', '--', 'HandleVisibility', 'off');
yline(3.8e-3, 'LineWidth', 1, 'LineStyle', '--', 'HandleVisibility', 'off');
yline(2e-2, 'LineWidth', 1, 'LineStyle', '--', 'HandleVisibility', 'off');
ylim([1e-5, 0.1]);
end
xlim([15,35]);
ylim([9e-5 0.1 ]);
xticks([13:2:35]);
% Enable grid and beautify
grid on;
beautifyBERplot;
end
end
function resultTable = groupIt(fixedVars, dataTable, aggregationFunction)
% groupIt Groups data in a table based on fixedVars and applies aggregationFunction to numeric data.
%
% resultTable = groupIt(fixedVars, dataTable, aggregationFunction)
%
% Inputs:
% fixedVars - Cell array of variable names to group by
% dataTable - Input MATLAB table
% aggregationFunction - Function handle (e.g., @mean, @min, @max)
%
% Output:
% resultTable - Grouped and aggregated table
% Group data
[G, groupKeys] = findgroups(dataTable(:, fixedVars));
% Prepare aggregation
varNames = dataTable.Properties.VariableNames;
nVars = numel(varNames);
aggData = cell(height(groupKeys), nVars);
groupCount = zeros(height(groupKeys), 1); % Store number of rows in each group
% Loop over groups
for i = 1:height(groupKeys)
idx = (G == i); % Logical index for group i
groupCount(i) = sum(idx); % Count rows in group
% Loop over each variable
for j = 1:nVars
colData = dataTable.(varNames{j});
if isnumeric(colData)
% Numeric: apply aggregation function (skip empty groups safely)
if any(idx)
% aggData{i, j} = rmoutliers(double(colData(idx)));
aggData{i, j} = aggregationFunction(colData(idx));
else
aggData{i, j} = NaN;
end
else
% Non-numeric: take first non-empty value
if iscell(colData)
nonEmptyIdx = find(idx & ~cellfun(@isempty, colData), 1);
if ~isempty(nonEmptyIdx)
aggData{i, j} = colData{nonEmptyIdx};
else
aggData{i, j} = [];
end
else
nonEmptyIdx = find(idx, 1);
if ~isempty(nonEmptyIdx)
aggData{i, j} = colData(nonEmptyIdx);
else
aggData{i, j} = [];
end
end
end
end
end
% Convert aggregated data to table
resultTable = cell2table(aggData, 'VariableNames', varNames);
% Add group size as new column
resultTable.nRows = groupCount;
end
function addDatatips(sc, varargin)
% addDatatips Adds custom data tip rows to a scatter plot.
%
% addDatatips(sc, pair1, pair2, ...) adds one or more custom rows to the
% data tip display of the scatter plot identified by sc.
%
% Each pair should be provided as a 1x2 cell array: {label, value}.
% The value can be a scalar or a vector. If a vector is provided, its length
% must match the number of scatter plot points.
%
% Example:
% sc = scatter(x, y, 'LineWidth', 1.5, 'Marker', 'o');
% pair_one = {'Attenuation', attenuationVector};
% addDatatips(sc, pair_one);
numPoints = numel(sc.XData);
for k = 1:length(varargin)
pair = varargin{k};
if ~iscell(pair) || numel(pair) ~= 2
error('Each pair must be a 1x2 cell array: {label, value}.');
end
label = pair{1};
value = pair{2};
% If value is a vector, ensure its length is either 1 or equal to the number of scatter points.
if isvector(value) && numel(value) ~= 1 && numel(value) ~= numPoints
error('The vector for "%s" must be a scalar or have %d elements matching the scatter data points.', label, numPoints);
end
% Create a new data tip row using the provided label and vector.
newRow = dataTipTextRow(label, value);
sc.DataTipTemplate.DataTipRows(end+1) = newRow;
end
end
function cleanedTable = cleanUpTable(inputTable)
% cleanUpTable Cleans a MATLAB table where numbers and NaNs are stored as strings or structs.
%
% cleanedTable = cleanUpTable(inputTable)
%
% This function goes through all columns of the input table:
% - Converts strings of numbers to numeric values
% - Converts string 'NaN' and struct NaNs to real NaN
% - Converts date strings to datetime (if possible)
%
% Input:
% inputTable - MATLAB table with mixed types
%
% Output:
% cleanedTable - Cleaned MATLAB table with proper numeric types
cleanedTable = inputTable;
varNames = cleanedTable.Properties.VariableNames;
for i = 1:numel(varNames)
col = cleanedTable.(varNames{i});
% Case 1: If it's a cell array (likely mixed strings/struct)
if iscell(col)
% Convert struct 'NaN' entries to string 'NaN'
col = cellfun(@(x) convertStructToString(x), col, 'UniformOutput', false);
% Try to convert string numbers to actual numbers
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, 'NaN') | cellfun(@isempty, col))
% If conversion is successful (NaNs correspond to 'NaN' strings), use it
cleanedTable.(varNames{i}) = numericCol;
else
% Else, try to convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss.SSSSSS');
catch
% If it fails, leave as cell array of strings
cleanedTable.(varNames{i}) = string(col);
end
end
% Case 2: If it's already a string array
elseif isstring(col)
numericCol = str2double(col);
if all(isnan(numericCol) == strcmpi(col, "NaN"))
cleanedTable.(varNames{i}) = numericCol;
else
% Try convert to datetime
try
cleanedTable.(varNames{i}) = datetime(col, 'InputFormat', 'yyyy-MM-dd HH:mm:ss');
catch
% Leave as string
end
end
% Case 3: If it's already numeric, keep as is
elseif isnumeric(col)
continue;
% Case 4: If it's datetime, keep as is
elseif isdatetime(col)
continue;
else
% Catch-all for unexpected types, convert to string
cleanedTable.(varNames{i}) = string(col);
end
end
end
function out = convertStructToString(x)
% Helper function to convert struct NaN to string 'NaN'
if isstruct(x)
out = "NaN";
elseif isstring(x) || ischar(x)
out = string(x);
else
out = x;
end
end
function [cleanedTable, outliersTable] = removeGroupOutliers(dataTable, fixedVars, y_var)
% Group the data
[G, groupKeys] = findgroups(dataTable(:, fixedVars));
% Initialize logical index to keep rows
keepIdx = true(height(dataTable), 1);
% Prepare storage for outliers
outlierRecords = [];
% Loop over each group
for groupIdx = 1:height(groupKeys)
% Find indices of current group
groupRows = (G == groupIdx);
% Extract y-values of this group
y_values = dataTable.(y_var)(groupRows);
% Skip groups with fewer than 3 points (optional)
if sum(groupRows) < 3
continue;
end
% Detect outliers in log space
y_log = log10(y_values);
outlierMask = isoutlier(y_log, 'quartiles',1); % or 'median', 'grubbs', etc.
% If any outliers found, collect their data
if any(outlierMask)
groupData = dataTable(groupRows, :);
% Prepare table for current group outliers
outlierGroupTable = groupData(outlierMask, :);
% Add group key values for traceability
for k = 1:numel(fixedVars)
outlierGroupTable.(['Group_', fixedVars{k}]) = repmat(groupKeys{groupIdx, k}, height(outlierGroupTable), 1);
end
% Append to collection
outlierRecords = [outlierRecords; outlierGroupTable]; %#ok<AGROW>
end
% Mark outliers for removal
groupRowIdx = find(groupRows);
keepIdx(groupRowIdx(outlierMask)) = false;
end
% Apply mask to dataTable
cleanedTable = dataTable(keepIdx, :);
% Prepare output: if no outliers, return empty table
if isempty(outlierRecords)
outliersTable = table();
else
outliersTable = outlierRecords;
end
nRemoved = sum(~keepIdx);
nTotalOriginal = height(dataTable) + nRemoved;
percentageRemoved = (nRemoved / nTotalOriginal) * 100;
fprintf('Removed %d outliers from the data table (%.2f%% of total %d entries).\n', ...
nRemoved, percentageRemoved, nTotalOriginal);
end