work on MPI
This commit is contained in:
Silas Oettinghaus
@@ -127,7 +127,9 @@ for sirval = [20,30,50]
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pngTikzPath = "04_Experimental_Evaluation/tikz/mpi/" + exportName + "-1.png";
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figure(sirval + pathlen);
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exportNakedPlotWithTikz(gca, pngFile, tikzFile, pngTikzPath, 150);
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exportLevelScatterTikz(gca, pngFile, tikzFile, pngTikzPath, ...
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"resolutionDpi", 150, ...
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"generatedBy", "plot_mpi_timesignal.m");
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end
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end
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@@ -145,309 +147,3 @@ end
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% var_slope = p(1);
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% var_offset = p(2);c
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function exportNakedPlotWithTikz(sourceAx, pngFile, tikzFile, pngTikzPath, resolutionDpi)
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outputDir = fileparts(pngFile);
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if ~exist(outputDir, "dir")
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mkdir(outputDir);
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end
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exportScatterLayerPng(sourceAx, pngFile, resolutionDpi);
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linePlots = collectTikzLinePlots(sourceAx);
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textAnnotations = collectTikzTextAnnotations(sourceAx);
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writeTikzPngAxis(tikzFile, pngTikzPath, sourceAx, linePlots, textAnnotations);
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end
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function exportScatterLayerPng(sourceAx, pngFile, resolutionDpi)
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sourceFig = ancestor(sourceAx, "figure");
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xLimits = sourceAx.XLim;
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yLimits = sourceAx.YLim;
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scatterHandles = findGraphicsObjectsByType(sourceAx, "scatter");
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exportFig = figure( ...
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"Visible", "off", ...
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"Color", "white", ...
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"Units", sourceFig.Units, ...
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"Position", sourceFig.Position);
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cleanupFigure = onCleanup(@() close(exportFig));
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exportAx = copyobj(sourceAx, exportFig);
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exportAx.Units = "normalized";
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exportAx.Position = [0 0 1 1];
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exportAx.XLim = xLimits;
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exportAx.YLim = yLimits;
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exportAx.XLimMode = "manual";
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exportAx.YLimMode = "manual";
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stripAxesToScatterOnly(exportAx);
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hideAxesInkForRasterExport(exportAx);
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fprintf("Exporting scatter PNG with XLim=[%g %g], YLim=[%g %g], scatter objects=%d: %s\n", ...
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xLimits(1), xLimits(2), yLimits(1), yLimits(2), numel(scatterHandles), pngFile);
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drawnow;
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exportFig.PaperPositionMode = "auto";
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print(exportFig, char(pngFile), "-dpng", sprintf("-r%d", resolutionDpi));
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end
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function stripAxesToScatterOnly(ax)
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plotObjects = findall(ax);
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for objIdx = 1:numel(plotObjects)
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obj = plotObjects(objIdx);
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if obj == ax || ~isvalid(obj)
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continue
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end
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objType = string(get(obj, "Type"));
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if lower(objType) ~= "scatter"
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delete(obj);
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end
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end
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end
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function hideAxesInkForRasterExport(ax)
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ax.Visible = "on";
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ax.Color = "white";
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ax.Box = "off";
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ax.XGrid = "off";
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ax.YGrid = "off";
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ax.XMinorGrid = "off";
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ax.YMinorGrid = "off";
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ax.XTick = [];
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ax.YTick = [];
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ax.XColor = "white";
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ax.YColor = "white";
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ax.Title.String = "";
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ax.XLabel.String = "";
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ax.YLabel.String = "";
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end
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function handles = findGraphicsObjectsByType(parentHandle, objectType)
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allHandles = findall(parentHandle);
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matches = false(size(allHandles));
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for handleIdx = 1:numel(allHandles)
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currentHandle = allHandles(handleIdx);
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if ~isvalid(currentHandle)
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continue
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end
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matches(handleIdx) = lower(string(get(currentHandle, "Type"))) == lower(string(objectType));
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end
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handles = allHandles(matches);
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end
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function linePlots = collectTikzLinePlots(sourceAx)
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lineHandles = findGraphicsObjectsByType(sourceAx, "line");
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lineHandles = flipud(lineHandles(:));
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linePlots = repmat(struct( ...
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"xData", [], ...
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"yData", [], ...
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"color", [], ...
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"lineWidth", []), numel(lineHandles), 1);
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validLineCount = 0;
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for lineIdx = 1:numel(lineHandles)
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lineHandle = lineHandles(lineIdx);
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xData = lineHandle.XData(:);
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yData = lineHandle.YData(:);
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validSamples = isfinite(xData) & isfinite(yData);
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if ~any(validSamples)
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continue
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end
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validLineCount = validLineCount + 1;
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linePlots(validLineCount).xData = xData(validSamples);
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linePlots(validLineCount).yData = yData(validSamples);
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linePlots(validLineCount).color = lineHandle.Color;
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linePlots(validLineCount).lineWidth = lineHandle.LineWidth;
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end
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linePlots = linePlots(1:validLineCount);
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end
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function textAnnotations = collectTikzTextAnnotations(sourceAx)
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textHandles = findGraphicsObjectsByType(sourceAx, "text");
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textHandles = flipud(textHandles(:));
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xLimits = sourceAx.XLim;
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yLimits = sourceAx.YLim;
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textAnnotations = repmat(struct( ...
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"x", [], ...
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"y", [], ...
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"text", "", ...
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"anchor", "center"), numel(textHandles), 1);
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validTextCount = 0;
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for textIdx = 1:numel(textHandles)
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textHandle = textHandles(textIdx);
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labelText = string(textHandle.String);
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if strlength(strtrim(labelText)) == 0
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continue
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end
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textPosition = textHandle.Position;
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if textPosition(1) < xLimits(1) || textPosition(1) > xLimits(2) || ...
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textPosition(2) < yLimits(1) || textPosition(2) > yLimits(2)
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continue
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end
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validTextCount = validTextCount + 1;
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textAnnotations(validTextCount).x = textPosition(1);
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textAnnotations(validTextCount).y = textPosition(2);
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textAnnotations(validTextCount).text = labelText;
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textAnnotations(validTextCount).anchor = matlabTextAlignmentToTikzAnchor( ...
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textHandle.HorizontalAlignment, textHandle.VerticalAlignment);
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end
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textAnnotations = textAnnotations(1:validTextCount);
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end
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function writeTikzPngAxis(tikzFile, pngTikzPath, sourceAx, linePlots, textAnnotations)
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outputDir = fileparts(tikzFile);
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if ~exist(outputDir, "dir")
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mkdir(outputDir);
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end
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xLimits = sourceAx.XLim;
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yLimits = sourceAx.YLim;
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fid = fopen(tikzFile, "w");
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if fid < 0
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error("plot_mpi_timesignal:TikzOpenFailed", ...
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"Could not open TikZ export file: %s", tikzFile);
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end
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cleanupFile = onCleanup(@() fclose(fid));
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axisOptions = {
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" every axis/.append style={font=\scriptsize},"
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"width=\fwidth,"
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"height=\fheight,"
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"at={(0\fwidth,0\fheight)},"
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"scale only axis,"
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"axis on top,"
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"xmin=" + formatPgfNumber(xLimits(1)) + ","
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"xmax=" + formatPgfNumber(xLimits(2)) + ","
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"xlabel style={font=\color{white!15!black}\small},"
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"xlabel={Time in $\mu$s},"
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"ymin=" + formatPgfNumber(yLimits(1)) + ","
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"ymax=" + formatPgfNumber(yLimits(2)) + ","
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"ylabel style={font=\color{white!15!black}\small},"
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"ylabel={Normalized Amplitude},"
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"axis background/.style={fill=white},"
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"xmajorgrids,"
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"ymajorgrids,"
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"grid style={line width=0.4pt, dotted, color=black!20},"
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"scaled ticks=false,"
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"tick label style={/pgf/number format/fixed, /pgf/number format/1000 sep={}},"
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"legend columns=1"
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};
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fprintf(fid, "%% This file was generated by plot_mpi_timesignal.m.\n");
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fprintf(fid, "%%\n");
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for lineIdx = 1:numel(linePlots)
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fprintf(fid, "%s\n", formatTikzColorDefinition(lineIdx, linePlots(lineIdx).color));
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end
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if ~isempty(linePlots)
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fprintf(fid, "%%\n");
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end
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fprintf(fid, "%s\n\n", "\begin{tikzpicture}");
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fprintf(fid, "%s\n", "\begin{axis}[%");
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for optionIdx = 1:numel(axisOptions)
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fprintf(fid, "%s\n", axisOptions{optionIdx});
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end
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fprintf(fid, "%s\n", "]");
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graphicsLine = sprintf( ...
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"\\addplot [forget plot] graphics [xmin=%s, xmax=%s, ymin=%s, ymax=%s] {%s};", ...
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formatPgfNumber(xLimits(1)), ...
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formatPgfNumber(xLimits(2)), ...
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formatPgfNumber(yLimits(1)), ...
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formatPgfNumber(yLimits(2)), ...
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char(strrep(pngTikzPath, "\", "/")));
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fprintf(fid, "%s\n\n", graphicsLine);
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writeTikzLinePlots(fid, linePlots);
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writeTikzTextAnnotations(fid, textAnnotations);
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fprintf(fid, "%s\n\n", "\end{axis}");
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fprintf(fid, "%s", "\end{tikzpicture}%");
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end
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function valueText = formatPgfNumber(value)
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valueText = string(sprintf("%.15g", value));
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end
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function colorDefinition = formatTikzColorDefinition(colorIdx, rgbColor)
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colorDefinition = sprintf( ...
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"\\definecolor{mycolor%d}{rgb}{%.5f,%.5f,%.5f}%%", ...
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colorIdx, rgbColor(1), rgbColor(2), rgbColor(3));
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end
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function writeTikzLinePlots(fid, linePlots)
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for lineIdx = 1:numel(linePlots)
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fprintf(fid, "\\addplot [color=mycolor%d, line width=%.1fpt, forget plot]\n", ...
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lineIdx, linePlots(lineIdx).lineWidth);
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fprintf(fid, " table[row sep=crcr]{%%\n");
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for sampleIdx = 1:numel(linePlots(lineIdx).xData)
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fprintf(fid, "%s\t%s\\\\\n", ...
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formatPgfNumber(linePlots(lineIdx).xData(sampleIdx)), ...
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formatPgfNumber(linePlots(lineIdx).yData(sampleIdx)));
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end
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fprintf(fid, "};\n\n");
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end
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end
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function writeTikzTextAnnotations(fid, textAnnotations)
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for textIdx = 1:numel(textAnnotations)
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fprintf(fid, "\\node[font=\\scriptsize, anchor=%s, fill=white, draw=black!40, rounded corners=2pt, inner sep=2pt]\n", ...
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textAnnotations(textIdx).anchor);
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fprintf(fid, " at (axis cs:%s,%s) {%s};\n\n", ...
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formatPgfNumber(textAnnotations(textIdx).x), ...
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formatPgfNumber(textAnnotations(textIdx).y), ...
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escapeTikzText(textAnnotations(textIdx).text));
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end
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end
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function anchor = matlabTextAlignmentToTikzAnchor(horizontalAlignment, verticalAlignment)
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horizontalAlignment = string(horizontalAlignment);
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verticalAlignment = string(verticalAlignment);
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if horizontalAlignment == "left"
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horizontalAnchor = "west";
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elseif horizontalAlignment == "right"
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horizontalAnchor = "east";
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else
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horizontalAnchor = "";
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end
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if verticalAlignment == "top"
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verticalAnchor = "north";
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elseif verticalAlignment == "bottom"
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verticalAnchor = "south";
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else
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verticalAnchor = "";
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end
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if strlength(horizontalAnchor) > 0 && strlength(verticalAnchor) > 0
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anchor = verticalAnchor + " " + horizontalAnchor;
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elseif strlength(horizontalAnchor) > 0
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anchor = horizontalAnchor;
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elseif strlength(verticalAnchor) > 0
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anchor = verticalAnchor;
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else
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anchor = "center";
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end
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end
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function textOut = escapeTikzText(textIn)
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textOut = char(textIn);
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% textOut = strrep(textOut, "\", "\textbackslash{}");
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textOut = strrep(textOut, "{", "\{");
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textOut = strrep(textOut, "}", "\}");
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textOut = strrep(textOut, "%", "\%");
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textOut = strrep(textOut, "&", "\&");
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textOut = strrep(textOut, "#", "\#");
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textOut = strrep(textOut, "_", "\_");
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% textOut = strrep(textOut, "$", "\$");
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end
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